The SOP window controls instrument operations (presently only BOSS). The SOP window supports a few of the most commonly used sop commands. More may be added on request, and some may be placed in a new panel at some point.
Each supported sop commands has its own panel in the SOP window. Each command has at least some of the following buttons:
Each command and stage has a status area to the left that shows what the command is going. This status is entirely based on the commandState keyword.
The Load Cartridge command is special because it is a guider command, not a sop command. The guider does not make any state information available for the command, so no status area is shown.
To temporarily bypass a system, press Bypass... and select the desired system from the dialog box. All bypassed systems are shown to the right of Bypass..., each as a button; press the button to clear that bypass (to stop bypassing that system).